ImageJ is a public domain image processing and analysis program written in Java. It is freely available and used by many scientists around the world. There is a very active ImageJ community and ImageJ is continuously improved. Fiji (Fiji stands for Fiji is Just ImageJ) is a distribution of ImageJ focused on 3D image reconstruction and analysis. For the workshop I would advise to install Fiji, as some things are easier to do in Fiji, but you can use plain ImageJ as well.
For more information visit: https://le.ac.uk/cbs/facilities/aif/workshops
Content and Program
A one day introduction workshop for ImageJ/Fiji. The aim of this day is to familiarize you with the use of the ImageJ/Fiji menus, plugins and macros for digital image processing and where to find information about its use. During this day there will be lectures and hands-on sessions on the basics of ImageJ/Fiji and we will have a closer look at a selection of macros and plugins.
- 9.30am - 10.30am Introduction lecture
- 10.30am - 11.00am Coffee/tea
- 11.00am - 12.30pm Hands-on session
- 12.30pm - 1.30pm Lunch
- 1.30pm - 2.30pm Plugins lecture
- 2.30pm - 3.30pm Hands-on session
- 3.30pm - 4.00pm Coffee/tea
- 4.00pm - 5.00pm Hands-on session
After the workshop there will be time to discuss individual questions concerning image analysis using ImageJ/Fiji on own data.